Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTLTTQFYTMLAMSGMGLWLGASLDTYRLFVIRAKTARWLLFIHDILFWIMQGLLFFYVLLHVNEGEFRIYIFLAVLLGVATYQSLCKRIYIKILKFVIYLVVSVYQFFKKLIQHVLFRPIVWTCGAIIWLAAFLFKKTYSLIGFLLLCLYKIVMVLCFPIRFIAKQCLKLLPVKMRLTFRRYFEKGAGFLKKKKKLLITIRTTITRFLKR |
| 4PND Chain:A ((13-25)) | -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KIENILWKIENIL------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4PND.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 3440 for 42 contacts (81.9/contact) +
2D Compatibility (PS) -1267 + (NN) -1141 + (LL) 22420
1D Compatibility (HY) -1600 + (ID) 200
Total energy: 21652.0 ( 515.52 by residue)
QMean score : 0.142
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