Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSIEVGSKLQGKITGITNFGAFVELPGGSTGLVHISEVADNYVKDINDHLKVGDQVEVKVINVE-KDGKIGLSIKKAKDRPQARPRNDFRPKESFEQKMNKFLKDSEDRLSSLKRNTESKRGGRGARRG
2OCE Chain:A ((655-729))
-----GMVLEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFVKDPYEVVKAGDIVKVKVMEVDIPRNRVGLSMRMS-DTP------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2OCE.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -41026 for 497 contacts (-82.5/contact) +
2D Compatibility (PS) -7799 + (NN) -690 + (LL) 2580
1D Compatibility (HY) -8000 + (ID) 1650
Total energy: -56585.0 ( -113.85 by residue)
QMean score : 0.618
(partial model without unconserved sides chains):
PDB file :
Tito_2OCE.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2OCE-query.scw
PDB file :
Tito_Scwrl_2OCE.pdb
: