Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MILMIDNYDSFTYNLVQYLGELGEELVVKRNDSITIDEIEELSPDFLMISPGPCSPDEAGISLEAIKHFAGKIPIFGVCLGHQSIAQVFGGDVVRAERLMHGKTSDIEHDGKTIFEGLKNPL-VATRYHSLIVKPETLPSCFTVTAQTKEGEIMAIRHNDLPIEGVQFHPESIMTSFGKEMLRNFIETYRKEVIA
2YWB Chain:A ((1-211))
MVLVLDFGSQYTRLIARRLRELRAFSLILPGDA-PLEEVLKHRPQALILSGGPRSVFDPDAPRPDPRLFSSGLPLLGICYGMQLLAQELGGRVERA---EYGKALLTRHEG-PLFRGLEGEVQVWMSHQDAVTAP---PPGWRVVAETEENPVAAIASPDGRAYGVQFHPEVAHTPKGMQILENFLE--------
General information:
TITO was launched using:
RESULT:
Template:
2YWB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -95837 for 1544 contacts (-62.1/contact) +
2D Compatibility (PS) -18360 + (NN) -3603 + (LL) 1932
1D Compatibility (HY) -6800 + (ID) 2900
Total energy: -125568.0 ( -81.33 by residue)
QMean score : 0.439
(partial model without unconserved sides chains):
PDB file :
Tito_2YWB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2YWB-query.scw
PDB file :
Tito_Scwrl_2YWB.pdb
: