Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRIMKFFKDVGKEMKKVSWPKGKELTRYTITVISTVIFFVIFFALLDTGISQLIRLIVE
5AWW Chain:E ((4-59))
-RLIRYFQEARAELARVTWPTREQVVEGTQAILLFTLAFMVILGLYDTVFRFLIGLL--
General information:
TITO was launched using:
RESULT:
Template:
5AWW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -10558 for 214 contacts (-49.3/contact) +
2D Compatibility (PS) -5655 + (NN) 934 + (LL) 504
1D Compatibility (HY) -7200 + (ID) 700
Total energy: -22675.0 ( -105.96 by residue)
QMean score : 0.321
(partial model without unconserved sides chains):
PDB file :
Tito_5AWW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-5AWW-query.scw
PDB file :
Tito_Scwrl_5AWW.pdb
: