Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAKKGKKYVEAAKLVDRSKAYDVSEAVALVKKTNTAKFDATVEVAFRLGVDPRKNDQQIRGAVVLPNGTGKTQRVLVFAKGEKAKEAEAAGADFVGDTDYINKIQQGWFDFDVIVATPDMMGEVG-KIGRVLGPKGLMPNPKTGTVTFEVEKAIGEIKAGKVEYRVDKAGNIHVPIGKVSFEDEKLVENFTTMYDTILKAKPAAAKGVYVKNVAVTSTMGPGVKVDSSTFNVK
4QVI Chain:A ((1-229))
MPKHGKRYRALLEKVDPNKIYTIDEAAHLVKELATAKFDETVEVHAKLGIDPRRSDQNVRGTVSLPHGLGKQVRVLAIAKGEKIKEAEEAGADYVGGEEIIQKILDGWMDFDAVVATPDVMGAVGSKLGRILGPRGLLPNPKAGTVGFNIGEIIREIKAGRIEFRNDKTGAIHAPVGKASFPPEKLADNIRAFIRALEAHKPEGAKGTFLRSVYVTTTLGPSVRINPHS----
General information:
TITO was launched using:
RESULT:
Template:
4QVI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -104978 for 1796 contacts (-58.5/contact) +
2D Compatibility (PS) -25007 + (NN) -14109 + (LL) 308
1D Compatibility (HY) -18000 + (ID) 6150
Total energy: -167936.0 ( -93.51 by residue)
QMean score : 0.615
(partial model without unconserved sides chains):
PDB file :
Tito_4QVI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4QVI-query.scw
PDB file :
Tito_Scwrl_4QVI.pdb
: