Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKRNQKEWESVSKKGLMKPGGTSIV---KAAGCMGCWASKSIAMTRVCALPHPAMRAI
2KQA Chain:A ((43-65))
------------------VGGIPDIAGWDSPSCGTCWKVTI-----------------
General information:
TITO was launched using:
RESULT:
Template:
2KQA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -2903 for 63 contacts (-46.1/contact) +
2D Compatibility (PS) -2121 + (NN) -1115 + (LL) 3220
1D Compatibility (HY) -800 + (ID) 250
Total energy: -3969.0 ( -63.00 by residue)
QMean score : -0.211
(partial model without unconserved sides chains):
PDB file :
Tito_2KQA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2KQA-query.scw
PDB file :
Tito_Scwrl_2KQA.pdb
: