Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMKKFPKKLLPIAVLSSIAFSSLASGSVPEASAQEKKKGNQDEIKNVIVLIGDGMGVSYTSAYRYLKDNKKTKVVEPTAFDQYLVGQQTTYPDDPEQNVTDSAAAATAMSAGIKTYNNAIAVDNDGSEAKTVLEAAKEKGKATGLVATSEITHATPASFGSHDHSRKNMNSIADDYFDEMVNGKHKIDVLLGGGKSNF-DRKD-RNLIKEFKKAGYSY----VDDRKDMLKNKDSQVLGLFADGGLPKKIDRTKDIPSLKDMTNTAIKKLNKDKDGFFLMVEGSQIDWAGHDNDIVGAMSEMEDFEQAYKAAIDFAKKDKHTLVVATADHSTGGYSIGADGIYNWFSEPIKAAKRTPDFMAEKIADGADVEKTLKTYIDQKKLALTKAEIQSVEEAAKSKEVLDIDNAIENIFNKRSHTGWTTGGHTGEDVPVYAYGPSSETFAGQIDNTEIAKNVFKALQYNIKINDK
2IUC Chain:B ((30-374))--------------------------------------QLKTPKNVILLISDGAGLSQISSTFYFKSGTPNY----TQFKN--IGLIKT--SSSREDVTDSASGATAFSCGIKTYNAAIGVADDSTAVKSIVEIAALNSIKTGVVATSSITHATPASFYAHALNRGLEEEIAMDMTES------DLDFFAGGGLNYFTSRSDSKDVLAILKGNQFTINTTGLTDFSSIASNRKMGFL--LADEAMPTMEKGRGNF--LSAATDLAIQFLSKDNSAFFIMSEGSQIDWGGHANNASYLISEINDFDDAIGTALAFAKSDGNTLVIVTSDHETGG-----------FTLAAKSNK-------------SE-------YSDYTEIGPT----------------------------------FSTGGHSATLIPVFAYGPGSEEFIGIYENNEIFHKILKVTKWN------


General information:
TITO was launched using:
RESULT:

Template: 2IUC.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain B - contact count / total energy / energy per contact / energy per residue : 2205 -108857 -49.37 -324.94
target 2D structure prediction score : 0.63
Monomeric hydrophicity matching model chain B : 0.73

3D Compatibility (PKB) : -49.37
2D Compatibility (Sec. Struct. Predict.) : 0.63
1D Compatibility (Hydrophobicity) : 0.73
QMean score : 0.389

(partial model without unconserved sides chains):
PDB file : Tito_2IUC.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-2IUC-query.scw
PDB file : Tito_Scwrl_2IUC.pdb: