Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMKKTMSAITAAAAVTSCFTGFGAASFSAPAKAAAQTNTLSENTNQSAAELVKNLYNTAYKGEMPQQAQGLTINKSTKGDVHAAFGEPERPVGGD---NRFDLYHWNMGQPGYGFSYHKDMTISEIRYFGTGVER---------QLNLGGVTPEVLQKQLGPVNRVLTVPFTD--EIDYVYDTGRYELHFVIGTDQTADHVNLKAK
3D4E Chain:A ((42-149))------------------------------------------------------------------------GGTSIEQLKQWFGDPNKSEQRNAGNITLDSYTWVKDGAVINAQLYKNS-TVARSISNFSFSREAKIGKEDYDELKIGESYKKIVEKLGEPDVLSQSMSSDKEEMQTVWS------------------------


General information:
TITO was launched using:
RESULT:

Template: 3D4E.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 321 -11263 -35.09 -119.82
target 2D structure prediction score : 0.56
Monomeric hydrophicity matching model chain A : 0.60

3D Compatibility (PKB) : -35.09
2D Compatibility (Sec. Struct. Predict.) : 0.56
1D Compatibility (Hydrophobicity) : 0.60
QMean score : 0.295

(partial model without unconserved sides chains):
PDB file : Tito_3D4E.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3D4E-query.scw
PDB file : Tito_Scwrl_3D4E.pdb: