Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MTGSVDRPDQNRGERSMKSPGLDLVRRTLDEARAAARARGQDAGRGRVASVASGRVAGRRRSWSGPGPDIRDPQPLGKAARELAKKRGWSVRVAEGMVLGQWS---AVVGHQIAEHARPTALNDGVLSVIAESTAWATQLRIMQAQLLAKIAAAVGNDVVRSLKITGPAAPSWRKGPRHIAGRGPRDTYG |
3UBR Chain:A ((339-384)) | ---------------------------------------------------------------------------------------------------AQWRWDLAIASHGVAAHAPEEALR-----VLGTSVNKAADARVKLAQLLAK---------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3UBR.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -3095 for 211 contacts (-14.7/contact) +
2D Compatibility (PS) -4646 + (NN) -274 + (LL) 6092
1D Compatibility (HY) -2000 + (ID) 950
Total energy: -4873.0 ( -23.09 by residue)
QMean score : -0.081
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