Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MADCDSVTNSPLATATATLHTNRGDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFMIQGGDPTGTGRGG---PGYKFADEFHPELQFDKPYLLAMANAGPGTNGSQFFITVGKTPHLNRRHTIFGEVIDA-ESQRVVEAISKTATDGNDRPTDPVVIESITIS
2OJU Chain:A ((8-160))
---------------SVTLHTDVGDIKIEVFCERTPKTCENFLALC---------------ASNYYNGCIFHRNIKGFMVQTGDPTGTGRGGNSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDELEKLP--VNEKTYRPLNDVHIKDITI-
General information:
TITO was launched using:
RESULT:
Template:
2OJU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -71069 for 1119 contacts (-63.5/contact) +
2D Compatibility (PS) -15908 + (NN) -9329 + (LL) 604
1D Compatibility (HY) -12800 + (ID) 3800
Total energy: -112302.0 ( -100.36 by residue)
QMean score : 0.629
(partial model without unconserved sides chains):
PDB file :
Tito_2OJU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2OJU-query.scw
PDB file :
Tito_Scwrl_2OJU.pdb
: