Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQGLVLQLTRAGFLMLLWVFIWSVLRILKTDIYAPTGAVMMRRGLALRGTLLGARQRRHAARYLVVTEGALTGARITLSEQPVLIGRADDSTLVLTDDYASTRHARLSMRGSEWYVEDLGSTNGTYLDRAKVTTAVRVPIGTPVRIGKTAIELRP
2KB4 Chain:A ((38-132))
----------------------------------------------------GAENLPAGSALLVVKRGPNAGARFLLDQPTTTAGRHPESDIFLDDVTVSRRHAEFRINEGEFEVVDVGSLNGTYVNREPRNAQV-MQTGDEIQIGK-------
General information:
TITO was launched using:
RESULT:
Template:
2KB4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -48231 for 654 contacts (-73.7/contact) +
2D Compatibility (PS) -10075 + (NN) -1846 + (LL) 6216
1D Compatibility (HY) -4800 + (ID) 1700
Total energy: -60436.0 ( -92.41 by residue)
QMean score : 0.345
(partial model without unconserved sides chains):
PDB file :
Tito_2KB4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2KB4-query.scw
PDB file :
Tito_Scwrl_2KB4.pdb
: