Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLARHFGAGRKAHSRAV----ATLKADIQ---AWHPAGIQTPKPRCESDVFARIGHTSHPSTRKSRVGPGASEAPLA
4LNG Chain:A ((170-245))
-LVRHFKLWD--HPREIQDVEALLKADVRNNSAWNHRYMLRFGPRDENEFDAGLHNTTGPSSEKGRL----------
General information:
TITO was launched using:
RESULT:
Template:
4LNG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 3721 for 273 contacts (13.6/contact) +
2D Compatibility (PS) -5950 + (NN) -3275 + (LL) 476
1D Compatibility (HY) -3200 + (ID) 1100
Total energy: -9328.0 ( -34.17 by residue)
QMean score : 0.345
(partial model without unconserved sides chains):
PDB file :
Tito_4LNG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4LNG-query.scw
PDB file :
Tito_Scwrl_4LNG.pdb
: