Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MSHTDLTPCTRVLASSGTVPIAEELLARVLEPYSCKGCRYLIDAQYSATEDSVLAYGNFTIGESAYIRSTGHFNAVELILCFNQLAYSAFAPAVLNEEIRVLRGWSIDDYCQHQLSSMLIRKASSRFRKPLNPQKFSARLLCRDLQVIERTWRYLKVPCVIEFWDENGG-AASGEIELAALNIP |
4QD8 Chain:A ((80-139)) | -------------------------------------------------------------------------------------------------------------------YYCVGLEVNANHLRGLRSGRVTAVARAIHLG-----RT--THVWDIRLSGDDGKPSCIARLTMAVVP-- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4QD8.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -13997 for 329 contacts (-42.5/contact) +
2D Compatibility (PS) -6147 + (NN) 658 + (LL) 9488
1D Compatibility (HY) -800 + (ID) 300
Total energy: -11098.0 ( -33.73 by residue)
QMean score : 0.279
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