Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSNRIVLEPSADHPITIEPTNRRVQVRVNGEVVADTAAALCLQEASYPAVQYIPLADVVQDRLIRTETSTYCPFKGEASYYSVTTDAGDIVDDVMWTYENPYPAVAAIAGHVACYPDKAEISIFPG
3NSS Chain:A ((165-208))
------------------------------------------------------------------------PSNGQASYKIFRIEKGKIVKSVEMNAPNYHYE------ECSCYPDSSEIT----
General information:
TITO was launched using:
RESULT:
Template:
3NSS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -6834 for 170 contacts (-40.2/contact) +
2D Compatibility (PS) -4434 + (NN) -174 + (LL) 6484
1D Compatibility (HY) -2000 + (ID) 800
Total energy: -7758.0 ( -45.64 by residue)
QMean score : 0.048
(partial model without unconserved sides chains):
PDB file :
Tito_3NSS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3NSS-query.scw
PDB file :
Tito_Scwrl_3NSS.pdb
: