Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGMDQQPNPPDVDAFLDSTLVGDDPALAAALAASDAAELPRIAVSAQQGKFLCLLAGAIQARRVLEIGTLGGFSTIWLARGAGPQGRVVTLEYQPKHAEVARVNLQRAGVADRVEVVVGPALDTLPTL--AGGP--FDLVFIDADKENNVAYIQWAIRLARRGAVIVVDNVIRGGGILAESDDADAVAARRTLQMMGEHPGLDATAIQTVGRKGWDGFALALVR
3R3H Chain:A ((4-184))
---KHLSLTPELYKYLLDISLREHPALAALRKETSTMELANMQVAPEQAQFMQMLIRLTRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFDFIFIDADKTNYLNYYELALKLVTPKGLIAIDNIFWDGKVIDPNDTS----------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3R3H.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -106145 for 1334 contacts (-79.6/contact) +
2D Compatibility (PS) -19701 + (NN) -9742 + (LL) 3220
1D Compatibility (HY) -15200 + (ID) 2650
Total energy: -150218.0 ( -112.61 by residue)
QMean score : 0.462
(partial model without unconserved sides chains):
PDB file :
Tito_3R3H.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3R3H-query.scw
PDB file :
Tito_Scwrl_3R3H.pdb
: