Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MAFPRTLAILAAAAALVVACSHGGTPTGSSTTSGASPATPVAVPVPRSCAEPAGIPALLSPRDKLAQLLVVGVRDAA---------------DAQAVVTNYHVGGI-LIGSDTDLTIFDGALAEIVAGGGP-LPLAVSVDEEGGRVSRLRSLIGGTGPSARELAQTRTVQQVRDLARDRGRQMRKLGITIDFAPVVDVTDAPDDTVIGDRSFGSDPATVTAYAGAYA-QGLRDAGVLPVLKHFPGHGRGSGDSHNG-GVTTPPLDDLVGDDLVPYRTLVTQAPVGVMVGHLQVPG---------LTGSE---PASLSKAAVN-LLRTGTGYGAPPFDGPVFSDDLSGMAAISDRFGVSEAVLRTLQAGADIALW---VTT----KEVPAVLDRLEQALRAGELPMSAVDRSVVRVATMKGPNPGCGR |
4GYJ Chain:A ((29-397)) | --------------------------------------EASA---SKRAIDANQIVNRMSLDEKLGQMLMPDFRNWQKEGESSPQALTKMNDEVASLVKKYQFGGIILFAENVKTTKQTVQLTDDYQKASPKIPLMLSIDQEGGIVTRLGE--GTNFPGNMALGAARSRINAYQTGSIIGKELSALGINTDFSPVVDINNNPDNPVIGVRSFSSN-RELTSRLGLYTMKGLQRQDIASALKHFPGHGDTDVDSHYGLPLVSHGQERLREVELYPFQKAIDAGADMVMTAHVQFPAFDDTTYKSKLDGSDILVPATLSKKVMTGLLRQEMG-----FNGVIVTNALN-MKAIADHFGQEEAVVMAVKAGVDIALMPASVTSLKEEQKFARVIQALKEAVKNGDIPEQQINNSVERIISLK-------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4GYJ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -123269 for 2873 contacts (-42.9/contact) +
2D Compatibility (PS) -35854 + (NN) -16773 + (LL) 1484
1D Compatibility (HY) -22000 + (ID) 5800
Total energy: -202212.0 ( -70.38 by residue)
QMean score : 0.424
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