Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTTIGTRKRVAVVTGASSGIGEATARTLAAQGFHVVAVARRADRITALANQIGGTA-----IVADVTD----DAAVEALARALSRVDVLVNNAGGAKGLQFVADADLEHWRWMWDTNVLGTLRVTRALLPKLIDSGDGLIVTVTSIAAIEVYDGGAGYTAAKHAQGALHRTLRGELLGKPVRLTEIAPGAVETEF-SLVRFDGDQQRADAVYAGMTPLVAADVAEVIGFVATRPSHVNLDQIVIRPRDQASASRRATHPVR
2JAP Chain:A ((8-246))
--------KVALITGASSGIGEATARALAAEGAAVAIAARRVEKLRALGDELTAAGAKVHVLELDVADRQGVDAAVASTVEALGGLDILVNNA-GIMLLGPVEDADTTDWTRMIDTNLLGLMYMTRAALPHLLRS-KGTVVQMSSIAGRVNVRNAAVYQATKFGVNAFSETLRQEVTERGVRVVVIEPGTTDTELRGHITHTATKEMYEQRISQIRKLQAQDIAEAVRYAVTAPHHATVHEIFIRPTDQ------------
General information:
TITO was launched using:
RESULT:
Template:
2JAP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -146186 for 1954 contacts (-74.8/contact) +
2D Compatibility (PS) -24798 + (NN) -8722 + (LL) 1040
1D Compatibility (HY) -12800 + (ID) 4750
Total energy: -196216.0 ( -100.42 by residue)
QMean score : 0.449
(partial model without unconserved sides chains):
PDB file :
Tito_2JAP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2JAP-query.scw
PDB file :
Tito_Scwrl_2JAP.pdb
: