Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MRVLLTGAAGFIGSRVDAALRAAGHDVVGVD--------------ALLPAAHGPNPVLPPGCQRVDVRDASALAPLLAGVDLVCHQAAMVGAGVNAADAPAYGGHNDFATTVLLAQMFAAGVRRLVLASSMVVYGQGRYDCPQHGPVDPLPRRRADLDNGVFEHRCPGCGEPVIWQLVDEDAPLRPRSLYAASKTAQEHYALAWSEASGGSVVALRYHNVYGPGMPRDTPYSGVAAIFRSAVEKGKPPKVFEDGGQMRDFVHVDDVAAANLAAVHLGEADRDGFTAVNVCSGRPISILQVATAICDARGGSMSPAITGH-------YRSGDVRHIVADPARAARVLGFRAAVDPGEGLREFAFAPLR |
| 1SB8 Chain:A ((31-340)) | ---LITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQG----DIRNLDDCNNACAGVDYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAKVQSFTYAASSSTYG----DHP---------------------------GLPKV-----EDTIGKPLSPYAVTKYVNELYADVFSRCYGFSTIGLRYFNVFGRRQDPNGAYAAVIPKWTSSMIQGDDVYINGDGETSRDFCYIENTVQANLLAATAGLDARN--QVYNIAVGGRTSLNQLFFAL---RDGLAENGVSYHREPVYRDFREGDVRHSLADISKAAKLLGYAPKYDVSAGV--------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1SB8.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -161561 for 2520 contacts (-64.1/contact) +
2D Compatibility (PS) -31820 + (NN) -14925 + (LL) 3104
1D Compatibility (HY) -10800 + (ID) 4850
Total energy: -220852.0 ( -87.64 by residue)
QMean score : 0.425
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