Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSDPVSYTRKDSIAVISMDDGKVNALGPAMQQALNAAIDNADRDDVGALVITGNGRVFSGGFDLKILTSGEVQPAIDMLRGGFELAYRLLSYPKPVVMACTGHAIAMGAFLLSCGDHRVAAHAYNIQANEVAIGMTIPYAALEIMKLRLTRSAYQQATGLAKTFFGETALAAGFIDEIALPEVVVSRAEEAAREFAGLNQHAHAATKLRSRADALTAIRAGIDGIAAEFGL
4HC8 Chain:A ((5-233))
--DPVSYTRKDSIAVISMDDGKVNALGPAMQQALNAAIDNADRDDVGALVITGNGRVFSGGFDLKILTSGEVQPAIDMLRGGFELAYRLLSYPKPVVMACTGHAIAMGAFLLSCGDHRVAAHAYNIQANEVAIGMTIPYAALEIMKLRLTRSAYQQATGLAKTFFGETALAAGFIDEIALPEVVVSRAEEAAREFAGLNQHAHAATKLRSRADALTAIRAGIDGIAAEFGL
General information:
TITO was launched using:
RESULT:
Template:
4HC8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -174536 for 1974 contacts (-88.4/contact) +
2D Compatibility (PS) -25511 + (NN) -11950 + (LL) 180
1D Compatibility (HY) -30000 + (ID) 11450
Total energy: -253267.0 ( -128.30 by residue)
QMean score : 0.590
(partial model without unconserved sides chains):
PDB file :
Tito_4HC8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4HC8-query.scw
PDB file :
Tito_Scwrl_4HC8.pdb
: