Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MALREFSSVKVGDQLPEKTYPLTRQDLVNYAGVSGDLNPIHWDDEIAKVVGLDTAIAHGMLTMGIGGGYVTSWVGDPGAVTEYNVRFTAVVPVPNDGKGAELVFNGRVKSVDPESKSVTIALTATTGGKKIFGRAIASAKLA
4RV2 Chain:B ((1-141))
-ALREFSSVKVGDTLPERVITLTRGDLVNYAGVSGDLNPIHWDDEIAKQVGLDTAIAHGMLTMGLGGGYVTSWVGDPAAVTEYNVRFTAVVPVPNDGVGAEITFNGRVKSVDAEEKLVTIAISATAGGKKIFGRAVATARLA
General information:
TITO was launched using:
RESULT:
Template:
4RV2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -83727 for 1057 contacts (-79.2/contact) +
2D Compatibility (PS) -14715 + (NN) -1053 + (LL) 208
1D Compatibility (HY) -16800 + (ID) 6000
Total energy: -122087.0 ( -115.50 by residue)
QMean score : 0.397
(partial model without unconserved sides chains):
PDB file :
Tito_4RV2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4RV2-query.scw
PDB file :
Tito_Scwrl_4RV2.pdb
: