Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIGITQAEAVLTIELQRPERRNALNSQLVEELTQAIRKAGDGSARAIVLTGQGTAFCAGADLSGDAFAADYPDRLIELHKAMDASPMPVVGAINGPAIGAGLQLAMQCDLRVVAPDAFFQFPTSKYGLALDNWSIRRLSSLVGHGRARAMLLSAEKLTAEIALHTGMANRIGTLADAQAWAAEIARLAPLAIQHAKRVLNDDGAIEEAWPAHKELFDKAWGSQDVIEAQVARMEKRPPKFQGA
5DU6 Chain:A ((21-263))
MIGITQAEAVLTIELQRPERRNALNSQLVEELTQAIRKAGDGSARAIVLTGQGTAFCAGADLSG--FAADYPDRLIELHKAMDASPMPVVGAINGPAIGAGLQLAMQCDLRVVAPDAFFQFPTSKYGLALDNWSIRRLSSLVGHGRARAMLLSAEKLTAEIALHTGMANRIGTLADAQAWAAEIARLAPLAIQHAKRVLNDDGAIEEAWPAHKELFDKAWGSQDVIEAQVARMEKRPPKFQGA
General information:
TITO was launched using:
RESULT:
Template:
5DU6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -140130 for 1959 contacts (-71.5/contact) +
2D Compatibility (PS) -26962 + (NN) -18487 + (LL) 68
1D Compatibility (HY) -29200 + (ID) 12050
Total energy: -226761.0 ( -115.75 by residue)
QMean score : 0.505
(partial model without unconserved sides chains):
PDB file :
Tito_5DU6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-5DU6-query.scw
PDB file :
Tito_Scwrl_5DU6.pdb
: