Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MILDMFRLDDKVAVITGGGRGLGAAIALAFAQAGADVLIASRTSSELDAVAEQIRAAGRRAHTVAADLAHPEVTAQLAGQAVGAFGKLDIVVNNVGGTMPNTLLSTSTKDLADAFAFNVGTAHALTVAAVPLMLEHSGGGSVINISSTMGRLAARGFAAYGTAKAALAHYTRLAALDLCPR-VRVNAIAPGSILTSALEVVAANDELRAPMEQATPLRRLGDPVDIAAAAVYLASPAGSFLTGKTLEVDGGLTFPNLDLPIPDL
3GAF Chain:A ((7-249))
-----FHLNDAVAIVTGAAAGIGRAIAGTFAKAGASVVVTDLKSEGAEAVAAAIRQAGGKAIGLECNVTDEQHREAVIKAALDQFGKITVLVNNAGGGGPKP-FDMPMSDFEWAFKLNLFSLFRLSQLAAPHM-QKAGGGAILNISSMAGENTNVRMASYGSSKAAVNHLTRNIAFDVGPMGIRVNAIAPGAIKTDALATV-LTPEIERAMLKHTPLGRLGEAQDIANAALFLCSPAAAWISGQVLTVSGG-------------
General information:
TITO was launched using:
RESULT:
Template:
3GAF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -150832 for 2087 contacts (-72.3/contact) +
2D Compatibility (PS) -26304 + (NN) -8719 + (LL) 1656
1D Compatibility (HY) -16400 + (ID) 5000
Total energy: -205599.0 ( -98.51 by residue)
QMean score : 0.579
(partial model without unconserved sides chains):
PDB file :
Tito_3GAF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GAF-query.scw
PDB file :
Tito_Scwrl_3GAF.pdb
: