Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKLNRFGAAVGVLAAGALVLSACGNDDNVTGGGATTGQASAKVDCGGKKTLKASGSTAQANAMTRFVNVFEQACPGQTLNYTANGSGAGISEFNGNQTDFGGSDVPLSKDEAAAAQRRCGSPAWNLPVVFGPIAVTYNLNSVSS--LNLDGPTLAKIFNGSITQWNNPAIQALNRDFTLPGERIHVVFRSDESGTTDNFQRYLQAASNGAWGK--GAGKSFQGGVGEGARGNDGTSAAAKNTPGSITYNEWSFAQAQHLTMANIVTSAGGDPVAITIDSVGQTIAGATISGV-GNDLVLDTDSFYRPKRPGSYPIVLATYEIVCSKYPDSQVGTAVKAFLQSTIGAGQSGLGDNGYIPIPDEFKSRLSTAVNAIA |
1A54 Chain:A ((3-307)) | -------------------------------------------------SLTGAGATFPAPVYAKWADTYQKET-GNKVNYQGIGSSGGVKQIIANTVDFGASDAPLS-DEKLAQEG-----LFQFPTVIGGVVLAVNIPGLKSGELVLDGKTLGDIYLGKIKKWDDEAIAKLNPGLKLPSQNIAVVRRADGSGTSFVFTSYL-AKVNEEWKNNVGTGSTVKWPIGLGGKGNDGIAAFVQRLPGAIGYVEYCYAKQNNLAYTKLI-SADGKPVSPTEENFANAAKGADWSKTFAQDLT-------NQKGEDAWPITSTTFILIHKDQKKPEQGTEVLKFFDWAYKTGAKQANDLDYASLPDSVVEQVRAA----- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1A54.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -99567 for 2706 contacts (-36.8/contact) +
2D Compatibility (PS) -32793 + (NN) -13709 + (LL) 2588
1D Compatibility (HY) -18400 + (ID) 4900
Total energy: -166781.0 ( -61.63 by residue)
QMean score : 0.426
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