Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQEPLRVPPSAPARLVVLASGTGSLLRSLLDAA-VGDYPARVVAVGVDR-ECRAAEIAAEASVPVFTVRLADHPSRDAWDVAITAATAAHEPDLVVSAGFMRILGPQFLSRFYGRTLNTHPALLPAFPGTHGVADALAYGVKVTGATVHLVDAGTDTGPILAQQPVPVLDGDDEETLHERIKVTERRLLVAAVAALATHGVTVVGRTATMGRKVTIG
3AUF Chain:A ((3-199))
-------------RIGVLISGSGTNLQAILDGCREGRIPGRVAVVISDRADAYGLERARRAGVDALHMDPAAYPSRTAFDAALAERLQAYGVDLVCLAGYMRLVRGPMLTAFPNRILNIHPSLLPAFPGLEAQRQALEHGVKVAGCTVHFVTAGVDEGPIILQAAVPVLEGDTVEDLRRRILAEEHRIYPEAIRLFAE------GRLVIEGRRVRI-
General information:
TITO was launched using:
RESULT:
Template:
3AUF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -149628 for 1613 contacts (-92.8/contact) +
2D Compatibility (PS) -22436 + (NN) -15660 + (LL) 928
1D Compatibility (HY) -12400 + (ID) 4350
Total energy: -203546.0 ( -126.19 by residue)
QMean score : 0.605
(partial model without unconserved sides chains):
PDB file :
Tito_3AUF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3AUF-query.scw
PDB file :
Tito_Scwrl_3AUF.pdb
: