Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRVAVLSGAGISAESGVPTFRDDKNGLWARFDPYELSSTQGWLRNPERVWGWYLWRHYLVANVEPNDGHRAIAAWQDHAEVS-VITQNVDDLHERAGSGAVHHLHGSLFEFRCARCGVPY-TDALPEMPEPAIEVEPPVCD-CGGLIRPDIVWFGEPLPEEPWRSAVEATGSADVMVVVGTSAIVYPAAGLPDLALARGTAVIEVNPEPTPLSGSATISIRESASQALPGLLERLPALLK
1M2J Chain:A ((15-237))
--LVALTGAGVSAESGIPTFRG-KDGLWNRYRPEELANPQAFAKDPEKVWKWYAWRMEKVFNAQPNKANQAFAELERLGVLKCLITQNVDDLHERAGSRNVIHLHGSLRVVRCTSCNNSFEVESAPKIPPL------PKCDKCGSLLRPGVVWFGEMLPPDVLDRAMREVERADVIIVAGTSAVVQPAASLPLIVKQRGGAIIEINPDETPLTPIADYSLRGKAGEVMDELV--------
General information:
TITO was launched using:
RESULT:
Template:
1M2J.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -106457 for 1840 contacts (-57.9/contact) +
2D Compatibility (PS) -24003 + (NN) -11738 + (LL) 1640
1D Compatibility (HY) -18000 + (ID) 5350
Total energy: -163908.0 ( -89.08 by residue)
QMean score : 0.526
(partial model without unconserved sides chains):
PDB file :
Tito_1M2J.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1M2J-query.scw
PDB file :
Tito_Scwrl_1M2J.pdb
: