Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MARQVFDDKLLAVISGNSIGVLATIKHDGRPQLSNVQYHFDPRKLLIQVSIAEPRAKTRNLRRDPRASILVDADDGWSYAVAEGTAQLTPPAAAPDDDTVEALIALYRNIAGEHSDWDDYRQAMVTDRRVLLTLPISHVYGLPPGMR
1W9A Chain:A ((6-147))
-----FDDKLLAVISGNSIGVLATIKHDGRPQLSNVQYHFDPRKLLIQVSIAEPRAKTRNLRRDPRASILVDADDGWSYAVAEGTAQLTPPAAAPDDDTVEALIALYRNIAGEHSDWDDYRQAMVTDRRVLLTLPISHVYGLPPGMR
General information:
TITO was launched using:
RESULT:
Template:
1W9A.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -58921 for 1028 contacts (-57.3/contact) +
2D Compatibility (PS) -15588 + (NN) -12196 + (LL) 764
1D Compatibility (HY) -12400 + (ID) 6050
Total energy: -104391.0 ( -101.55 by residue)
QMean score : 0.542
(partial model without unconserved sides chains):
PDB file :
Tito_1W9A.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1W9A-query.scw
PDB file :
Tito_Scwrl_1W9A.pdb
: