Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTVTDDYLANNVDYASG-------FKGPLPMPPSKHIAIVACMDARLDVYRMLGIKEGEAHVIRNAGCVVTDDVIRSLAISQRLLGTREIILLHHTDCGMLTFTDDDFKRAIQDETGI----------------RPTWSPESY------PDAVE-------------DVRQSLRRIEVNPFVTK----HTSLRGFVFDVATGKLNEVTP
3VQJ Chain:A ((6-210))
---TDALLENNRLYAGGQATHRPGHPGMQPIQPSRRVAVVACMDARLDVEDLLGLQTGEAHIIRNAGGVINEDAIRCLIISHHLLNTHEIILVHHTRCGMLAFTDDLLRAGLEGDAAAEKLIGQATGRAFVSAGKASASPAAFQAFRGPPEPLDAPRSDASTERIAADVRRGLSIILNHPWLPTAGPDAITVRGFIYDVDTGRLEEVS-
General information:
TITO was launched using:
RESULT:
Template:
3VQJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -99576 for 1129 contacts (-88.2/contact) +
2D Compatibility (PS) -16815 + (NN) -6032 + (LL) 312
1D Compatibility (HY) -15200 + (ID) 3900
Total energy: -141211.0 ( -125.08 by residue)
QMean score : 0.614
(partial model without unconserved sides chains):
PDB file :
Tito_3VQJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3VQJ-query.scw
PDB file :
Tito_Scwrl_3VQJ.pdb
: