Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRTPRRHCRRIAVLAAVSIAATVVAGCSSGSKPSGGPLPDAKPLVEEATAQTKALKSAHMVLTVNGKIPGLSLKTLSGDLTTNPTA---ATGNVKLTLGGSD--IDADFVVFDGILYATLTPNQWSDFGPAADIYDPAQVLNPDTGLANVLANFADAKAEGRDTINGQNTIRISGKVSAQAVNQIAPPF-NATQPVPATVWIQETGDH------QLAQAQLDRGSGNSVQMTLSKWGEKVQVTKPPVS
4QA8 Chain:A ((25-227))
---------------------------------------EAQQILQDSSKATKGLHSVHVVVTVN-NLSTLPFESVDADVTNQPQGNGQAVGNAKVRMKPNTPVVATEFLVTNKTMY-TKRGGDYVSVGPAEKIYDPGIILDKDRGLGAVVGQVQNPTIQGRDAIDGLATVKVSGTIDAAVIDPIVPQLGKGGGRLPITLWIVDTNASTPAPAANLVRMVIDKDQGN-VDITLSNWGAPVTIPNP---
General information:
TITO was launched using:
RESULT:
Template:
4QA8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -91261 for 1451 contacts (-62.9/contact) +
2D Compatibility (PS) -20746 + (NN) -9895 + (LL) 2004
1D Compatibility (HY) -18000 + (ID) 3100
Total energy: -140998.0 ( -97.17 by residue)
QMean score : 0.486
(partial model without unconserved sides chains):
PDB file :
Tito_4QA8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4QA8-query.scw
PDB file :
Tito_Scwrl_4QA8.pdb
: