Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTILEIKDLHVSVENPAEADHEIPILRGVDLTVKSGETHALMGPNGSGKSTLSYAIAGHPKYHVTSGTITLDGADVLAMSIDERARAGLFLAMQYPVEVPGVSMSNFLRSAATAI---RGEPPKLRHWVKEV-KAAMAALDIDPAFAERSVNEGFSGGEKKRHEILQLELLKPKIAILDETDSGLDVDALRVVSEGVNRYAESQHGGILLITHYTRILRYIHPEYVHVFVGGRIVESGGSELADELDQNGYVRFSPASGRYPHQPAPTGA
5AWG Chain:C ((1-237))
--MLSIKDLHVSVEDKA-------ILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKR-SFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFTLVKQLE-----------------------
General information:
TITO was launched using:
RESULT:
Template:
5AWG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -132191 for 1734 contacts (-76.2/contact) +
2D Compatibility (PS) -25323 + (NN) -11416 + (LL) 736
1D Compatibility (HY) -27600 + (ID) 6200
Total energy: -201994.0 ( -116.49 by residue)
QMean score : 0.517
(partial model without unconserved sides chains):
PDB file :
Tito_5AWG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-5AWG-query.scw
PDB file :
Tito_Scwrl_5AWG.pdb
: