Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRHTRFHPIKLAWITAVVAGLMVGVATPADAEPGQWDPTLPALVSAGAPGDPLAVANASLQATAQATQTTLDLGRQFLGGLGINLGGPAASAPSAATTGASRIPRANARQAVEYVIRRAGSQMGVPYSWGGGSLQGPSKGVDSGANTVGFDCSGLVRYAFAGVGVLIPRFSGDQYNAGRHVPPAEAKRGDLIFYGPGGGQHVTLYLGNGQMLEASGSAGKVTVSPVRKAGMTPFVTRIIEY
4Q4N Chain:A ((1003-1210))
---------------------------------GLWDPTLPMIPSANIPGDPIAVVNQVLGISATSAQVTANMGRKFLEQLGILQPTDTGITNAPAGSAQGRIPRVYGRQASEYVIRRGMSQIGVPYSWGGGNAAGPSKGIDSGAGTVGFDCSGLVLYSFAGVGIKLPHYSGSQYNLGRKIPSSQMRRGDVIFYGPNGSQAVTIYLGNGQMLEAPDVGLKVRVAPVRTAGMTPYVVRYIEY
General information:
TITO was launched using:
RESULT:
Template:
4Q4N.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -82929 for 1793 contacts (-46.3/contact) +
2D Compatibility (PS) -22164 + (NN) -14518 + (LL) 2868
1D Compatibility (HY) -18400 + (ID) 6200
Total energy: -141343.0 ( -78.83 by residue)
QMean score : ?
(partial model without unconserved sides chains):
PDB file :
Tito_4Q4N.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4Q4N-query.scw
PDB file :
Tito_Scwrl_4Q4N.pdb
: