Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MMPLILLPAVDVVEGRAVRLVQGKAGSQTEYGSAVDAALGWQRDGAEWIHLVDLDAAFGRGSNHELLAEVVGKLDVQVELSGGIRDDESLAAALATGCARVNVGTAALENPQWCARVIGEHGDQVAVGLDVQIIDGEHRLRGRGWETDGGDLWDVLERLDSEGCSRFVVTDITKDGTLGGPNLDLLAGVADRTDAPVIASGGVSSLDDLRAIATLTHRGVEGAIVGKALYARRFTLPQALAAVRD
5DN1 Chain:A ((1-239))
MSKLELLPAVDVRDGQAVRLVHGESGTETSYGSPLEAALAWQRSGAEWLHLVDLDAAFGTGDNRALIAEVAQAMDIKVELSGGIRDDDTLAAALATGCTRVNLGTAALETPEWVAKVIAEHGDKIAVGLDVR----GTTLRGRGWTRDGGDLYETLDRLNKEGCARYVVTDIAKDGTLQGPNLELLKNVCAATDRPVVASGGVSSLDDLRAIAGLVPAGVEGAIVGKALYAKAFTLEEALEAT--
General information:
TITO was launched using:
RESULT:
Template:
5DN1.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -148456 for 2116 contacts (-70.2/contact) +
2D Compatibility (PS) -25848 + (NN) -9365 + (LL) 184
1D Compatibility (HY) -26400 + (ID) 8250
Total energy: -218135.0 ( -103.09 by residue)
QMean score : 0.697
(partial model without unconserved sides chains):
PDB file :
Tito_5DN1.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-5DN1-query.scw
PDB file :
Tito_Scwrl_5DN1.pdb
: