Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MTDLAGTTRLLRAQGVTAPAGFRAAGVAAGIKASGALDLALVFNEGPDYAAAGVFTRNQVKAAPVLWTQQVLTTGRLRAVILNSGGANACTGPAGFADTHATAEAVAAALSDWGTETGAIEVAVCSTGLIGDRLPMDKLLAGVAHVVHEMHGGLVGGDEAAHAIMTTDNVPKQVALHHHDNWTVGGMAKGAGMLAPSLATMLCVLTTDAAAEPAALERALRRAAAATFDRLDIDGSCSTNDTVLLLSSG-ASEIPPAQADLDEAVLRVCDDLCAQLQADAEGVTKRVTVTVTGAATEDDALVAARQIARDSLVKTALFGSDPNWGRVLAAVGMAPITLDPDRISVSFNGAAVCVHGVGAPGAREVD---------LSDADIDITVDLGVGDGQARIRTTDLSHAYVEENSAYSS |
1VZ8 Chain:A ((9-390)) | ------------------PRGFVVHTAPVGLADDGRDDFTVLASTAPATVSA-VFTRSRFAGPSVVLCREAVADGQARGVVVLARNANVATGLEGEENAREVREAVARAL---GLPEG--EMLIASTGVIGRQYPMESIREHLKTL--EWPAGEGGFDRAARAIMTTDTRPKEVRVSVG-GATLVGIAKGVGMLEPDMATLLTFFATDARLDPAEQDRLFRRVMDRTFNAVSIDTDTSTSDTAVLFANGLAGEVDAGE--FEEALHTAALALVKDIASDGEGAAKLIEVQVTGARDDAQAKRVGKTVVNSPLVKTAVHGCDPNWGRVAMAIGKCSDDTDIDQERVTIRFGEVEVYPP-------DDALRAAVAEHLRGDEVVIGIDLAIADGAFTVYGCDLTEGYVRLNSE--- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1VZ8.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -184788 for 3316 contacts (-55.7/contact) +
2D Compatibility (PS) -40262 + (NN) -21036 + (LL) 1968
1D Compatibility (HY) -17600 + (ID) 6500
Total energy: -268218.0 ( -80.89 by residue)
QMean score : 0.440
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