Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MMISSSDELLRDGADPAVIIDQLRVIRGKRLALQDVSVRVACGTITGLLGPSGSGKTTLIRCIVGSQIIASGSVSVLGQ--PAGSAELRHRVGYMPQDPTIYNDLRVIDNIRYFAELCGVDRQAADEVIEAVDLRDHRTAR-----CANLSGGQRARVSLACALVGRPDLLVLDEPTIGLDPVLRVELWDRFTALARRGTTLLVSSHVMDEADR-CGDLLLLRQGQLLAHTTPHRLRKETGC--TSLEEAFLSIVRRTTTVPAAG
4RVC Chain:A ((19-241))
--------------------------------LEDVTFVVDRGEMVALIGLNGAGKSTTIKHIIGLMEPRRGAISINGYRLADGPETYRRQFAYIPETPVLYEELTLEEHLRLAAMAYGLSEAEYERRLPPL-LREFRLERRLSSFPAHFSKGMKQKVMIVCAFLLEPPLYIIDEPFLGLDPLAIHALLERMNEQKAKGAGILLSTHILATAERYCDSFVILHNGRVKAKGTLDDIRRQFGLRGASLDELYVELTK---------
General information:
TITO was launched using:
RESULT:
Template:
4RVC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -150773 for 1603 contacts (-94.1/contact) +
2D Compatibility (PS) -23496 + (NN) -8953 + (LL) 2916
1D Compatibility (HY) -17600 + (ID) 3200
Total energy: -201106.0 ( -125.46 by residue)
QMean score : 0.525
(partial model without unconserved sides chains):
PDB file :
Tito_4RVC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4RVC-query.scw
PDB file :
Tito_Scwrl_4RVC.pdb
: