Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MCGDQSDHVLQHWTVDISIDEHEG-LTRAKARLRWREKELVGVGLARLNPADRNVPEIGDELSVARALSDLGKRMLKVSTHDIEAVTHQPARLLY
1IZM Chain:A ((77-138))
---------VEGFTFELGLTEDENVFTQADSLSDWANQFLLGIGLAQPELA-KEKGEIGEAVDDLQDICQLG-----------------------
General information:
TITO was launched using:
RESULT:
Template:
1IZM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 5959 for 299 contacts (19.9/contact) +
2D Compatibility (PS) -6679 + (NN) -4400 + (LL) 2396
1D Compatibility (HY) -4400 + (ID) 850
Total energy: -7974.0 ( -26.67 by residue)
QMean score : 0.217
(partial model without unconserved sides chains):
PDB file :
Tito_1IZM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1IZM-query.scw
PDB file :
Tito_Scwrl_1IZM.pdb
: