Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSVLDLFDLHGKRALITGAS--TGIGKRVALAYVEAGAQVAI--AARHLDALEKLADEIGTSGGKVVPVCCDVSQHQQVTSMLDQVTAELGGIDIAVCNAGIITVTPMLDMPLEEFQRLQNTNVTGVFLTAQAAAKAMVKQGQGGVIINTASMSGHIINVPQQVSHYCASKAAVIHLTKAMAVELAPHKIRVNSVSPGYILTELVEPY-TEYQPLWEPKIPLGRLGRPEELAGLYLYLASEASSYMTGSDIVIDGGYTCP
3GDG Chain:A ((11-265))
-SLLDQLSLKGKVVVVTGASGPKGMGIEAARGCAEMGAAVAITYASRAQGAEENVKELEKTYGIKAKAYKCQVDSYESCEKLVKDVVADFGQIDAFIANAGATADSGILDGSVEAWNHVVQVDLNGTFHCAKAVGHHFKERGTGSLVI-TASMSGHIANFPQEQTSYNVAKAGCIHMARSLANEWRDF-ARVNSISPGYIDTGLSDFVPKETQQLWHSMIPMGRDGLAKELKGAYVYFASDASTYTTGADLLIDGGYT--
General information:
TITO was launched using:
RESULT:
Template:
3GDG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -159158 for 2145 contacts (-74.2/contact) +
2D Compatibility (PS) -27604 + (NN) -12382 + (LL) 108
1D Compatibility (HY) -12400 + (ID) 5150
Total energy: -216586.0 ( -100.97 by residue)
QMean score : 0.528
(partial model without unconserved sides chains):
PDB file :
Tito_3GDG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GDG-query.scw
PDB file :
Tito_Scwrl_3GDG.pdb
: