Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSGRLIGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAVAAELADAARYVHLDVTQPAQWTAAVDTAVTAFGGLHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEAGRGSIINISSIEGLAGTVACHGYTATKFAVRGLTKSTALELGPSGIRVNSIHPGLVKTPMTDWV-----PEDIFQTALGRAAEPVEVSNLVVYLASDESSYSTGAEFVVDGGTVAGLAHNDFGAVEVSSQPEWVT
1HDC Chain:A ((3-245))
----LSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATARELGDAARYQHLDVTIEEDWQRVVAYAREEFGSVDGLVNNAGISTGMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDAGGGSIVNISSAAGLMGLALTSSYGASKWGVRGLSKLAAVELGTDRIRVNSVHPGMTYTPMTAETGIRQGEGNYPNTPMGRVGEPGEIAGAVVKLLSDTSSYVTGAELAVDGGWTTG-------------------
General information:
TITO was launched using:
RESULT:
Template:
1HDC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -143603 for 2122 contacts (-67.7/contact) +
2D Compatibility (PS) -25036 + (NN) -2432 + (LL) 1336
1D Compatibility (HY) -14400 + (ID) 5950
Total energy: -190085.0 ( -89.58 by residue)
QMean score : 0.629
(partial model without unconserved sides chains):
PDB file :
Tito_1HDC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1HDC-query.scw
PDB file :
Tito_Scwrl_1HDC.pdb
: