Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MIGFAPVSTPDAAAEAAARARQDSLTKPRGALGSLEDLSVWVASCQQRCPPRQFERARVVVFAGDHGVARSGVSAYPPEVTAQMVAN-IDAGGAAINALADVAGATVRVADLAVDADPLSERIG--AHKVRRGSGNIATEDALTNDETAAAITAGQQIADEEVDAGADLLIAGDMGIGNTTAAAVLVAALTDAEPVAVVGFGTGIDDAGWARKTAAVRDALFRVRPVLPDPVGLLRCAGGADLAAIAGFCAQAAVRRTPLLLDGVAVTAAALVAERLAPGAHRWWQAGHRSSEPGHGLALAALGLDPIVDLHMRLGEGTGAAVALMVLRAAVAALSSMATFTEAGVSTRSVDGVDRTAPPAVSP |
4HDK Chain:A ((11-341)) | ----AKIMRPDTVIKDQVKTKLAGVLQSAGSLGRLEDMVEQYAGITGELNP-ALPKPCMVVASADHGVARRVV---PIETTIHMTANYLISQGASANAFANFCGADMVVVDMGVAGD-LSYVPGLWHRKIAYGTQDFTEGPAMTREQAIQAVETGIDIVNDRVKHGNRCFCLGEMGIGNTTSSATIVGAFTGLAPEKVTGRGTGIS---LKTKMEIVGRALAVNKPNPQDGLDVLAKVGGFELGALAGVILGSAANRCAVVIDGLNTTAAALIANVIHPLSKEYMFASHLSGEPAHSIALRQLQLEACLELGVRLGEGIGASMVVDMLYVAIKLLNN--------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4HDK.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -183161 for 3085 contacts (-59.4/contact) +
2D Compatibility (PS) -35217 + (NN) -22541 + (LL) 1632
1D Compatibility (HY) -21600 + (ID) 5650
Total energy: -266537.0 ( -86.40 by residue)
QMean score : 0.495
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