Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVAMLFYVDTLPDTGAVAVVDGDEGFHAATVRRIRPGEQLVLGDGVGRLARCVVEQAGRGGLRARVLRRWSVPPVRPPVTVV--QALPKSERSELAIELATEAGADAFLAWQAARCVANWDGARVDKGLRRWRAVVRSAARQSRRARIPPVDGVLSTPMLVQRVREEVAAGAAVLVLHEEATERIVDIAAAQAGSLMLVVGPEGGIAPDELAALTDAGAVAVRLGPTVLRTSTAAAVALGAVGVLTSRWDASASDCEYCDVTRR
4E8B Chain:A ((6-237))
----IYHPEPLTSHSHIALCE-DAANHIGRVLRMGPGQALQLFDGSNQVFDAEITSASKKSVEVKVLE-GQIDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLDSERLNKKLQQWQKIAIAACEQCGRNRVPEIRPAMDLEAWCAEQDEGLK-----LNLHPRASNSI-NTLPLPVERVRLLIGPEGGLSADEIAMTARYQFTDILLGPRVLRTETTALTAITALQV--------------------
General information:
TITO was launched using:
RESULT:
Template:
4E8B.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -139781 for 1750 contacts (-79.9/contact) +
2D Compatibility (PS) -24688 + (NN) -5709 + (LL) 2536
1D Compatibility (HY) -11200 + (ID) 3050
Total energy: -181892.0 ( -103.94 by residue)
QMean score : 0.367
(partial model without unconserved sides chains):
PDB file :
Tito_4E8B.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4E8B-query.scw
PDB file :
Tito_Scwrl_4E8B.pdb
: