Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGGTFDPIHYGHLVAASEVADLFDLDEVVFVPSGQPWQKGRQVSAAEHRYLMTVIATASNPRFSVSRVDIDRGGPTYTKDTLADLHALHPDSELYFTTGADALASIMSWQGWEELFELARFVGVSRPGYELRNEHITSLLGQLAKDALTLVEIPALAISSTDCRQRAEQSRPLWYLMPDGVVQYVSKCRLYCGACDAGARSTTSLAAGNGL
4YMI Chain:A ((33-224))
MGGTFDPIHNGHLVAASEVADRFALDEVIFVPTGQP----RKVSPAEHRYLMTVIATASNPRFTVSRADIDRGGATYTVDTLTDLRTAHPDADLYFITGADALASILSWENWEQLFTLAKFIGVSRPGY-----------------GLSLVEVPALAISSTDCRIRAGQARPIWYLVPDGVVQYVAKHRLYSG------------------
General information:
TITO was launched using:
RESULT:
Template:
4YMI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -138480 for 1350 contacts (-102.6/contact) +
2D Compatibility (PS) -18811 + (NN) -9597 + (LL) 2056
1D Compatibility (HY) -20400 + (ID) 6800
Total energy: -192032.0 ( -142.25 by residue)
QMean score : 0.478
(partial model without unconserved sides chains):
PDB file :
Tito_4YMI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4YMI-query.scw
PDB file :
Tito_Scwrl_4YMI.pdb
: