Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTERTLVLIKPDGIERQLIGEIISRIERKGLTIAALQLRTVSAELASQHYAEHEGKPFFGSLLEFITSGPVVAAIVEGTRAIAAVRQLAGGTDPVQAAAPGTIRGDFALETQFNLVHGSDSAESAQREIALWFPGA
3VVT Chain:A ((2-131))
--ERTFVMIKPDGVQRGLIGEIISRFERKGLKIVAMKMMRISREMAEKHYAEHREKPFFSALVDYITSGPVVAMVLEGKNAVEVVRKMVGATNP-KEAAPGTIRGDFGLDVGKNVIHASDSPESAEREISLFF---
General information:
TITO was launched using:
RESULT:
Template:
3VVT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -81562 for 1004 contacts (-81.2/contact) +
2D Compatibility (PS) -14171 + (NN) -5420 + (LL) 284
1D Compatibility (HY) -15200 + (ID) 3900
Total energy: -119969.0 ( -119.49 by residue)
QMean score : 0.600
(partial model without unconserved sides chains):
PDB file :
Tito_3VVT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3VVT-query.scw
PDB file :
Tito_Scwrl_3VVT.pdb
: