Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAPKAVLVGLPGSGKSTIGRRLAKALGVGLLDTDVAIEQRTGRSIADIFATDGEQEFRRIEEDVVRAALADHDGVLSLGGGAVTSPGVRAALAGHTVVYLEISAAEGVRRTGGNTVRPLLAGPDRAEKYRALMAKRAPLYRRVATMRVDTNRRNPGAVVRHILSRLQVPSPSEAAT
1ZYU Chain:A ((2-169))
-APKAVLVGLPGSGKSTIGRRLAKALGVGLLDTDVAIEQRTGRSIADIFATDGEQEFRRIEEDVVRAALADHDGVLSLGGGAVTSPGVRAALAGHTVVYLEISAAEGVRRTGGNTVRPLLAGPDRAEKYRALMAKRAPLYRRVATMRVDTNRRNPGAVVRHILSRLQVP-------
General information:
TITO was launched using:
RESULT:
Template:
1ZYU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -91807 for 1352 contacts (-67.9/contact) +
2D Compatibility (PS) -19005 + (NN) -11972 + (LL) 456
1D Compatibility (HY) -19600 + (ID) 8400
Total energy: -150328.0 ( -111.19 by residue)
QMean score : 0.910
(partial model without unconserved sides chains):
PDB file :
Tito_1ZYU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1ZYU-query.scw
PDB file :
Tito_Scwrl_1ZYU.pdb
: