Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVGLIWAQATSGVIGRGGDIPWRLPEDQAHFREITMGHTIVMGRRTWDSLPAKVRPLPGRRNVVLSRQADFMASGAEVVGSLEEALTSPETWVIGGGQVYALALPYATRCEVTEVDIGLPREAGDALAPVLDETWRGETGEWRFSRSGLRYRLYSYHRS
4KNE Chain:A ((21-179))
MVGLIWAQATSGVIGRGGDIPWRLPEDQAHFREITMGHTIVMGRRTWDSLPAKVRPLPGRRNVVLSRQADFMASGAEVVGSLEEALTSPETWVIGGGQVYALALPYATRCEVTEVDIGLPREAGDALAPVLDETWRGETGEWRFSRSGLRYRLYSYHRS
General information:
TITO was launched using:
RESULT:
Template:
4KNE.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -89140 for 1156 contacts (-77.1/contact) +
2D Compatibility (PS) -17263 + (NN) -7355 + (LL) 0
1D Compatibility (HY) -21200 + (ID) 7950
Total energy: -142908.0 ( -123.62 by residue)
QMean score : 0.880
(partial model without unconserved sides chains):
PDB file :
Tito_4KNE.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4KNE-query.scw
PDB file :
Tito_Scwrl_4KNE.pdb
: