Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKVKNTIAATSFAAAGLAALAVAVSPPAAAGDLVGPGCAEYAAANPTGPASVQGMSQDPVAVAASNNPELTTLTAALSGQLNPQVNLVDTLN-SGQYTVFAPTNAAFSKLPASTIDELKTNSSLLTSILTYHVVAGQTSPANVVG---TRQTLQGASVTVTGQGNSLKVGNADVVCGGVSTANATVYMIDSVLMPPA
1X3B Chain:A ((33-140))
--------------------------------------------------------------------------------------LTETLNREGVYTVFAPTNEAFRALPPRERSRLLGDAKELANILKYH-IGDEILVSGGIGALVRLKSLQGDKLEVSLKNNVVSVNKEPVAEPDIMATNGVVHVITNVLQP--
General information:
TITO was launched using:
RESULT:
Template:
1X3B.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -55412 for 687 contacts (-80.7/contact) +
2D Compatibility (PS) -11193 + (NN) -1053 + (LL) 5036
1D Compatibility (HY) -7200 + (ID) 1850
Total energy: -71672.0 ( -104.33 by residue)
QMean score : 0.503
(partial model without unconserved sides chains):
PDB file :
Tito_1X3B.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1X3B-query.scw
PDB file :
Tito_Scwrl_1X3B.pdb
: