Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSQIMYNYPAMMAHAGDMAGYAGTLQSLGADIASEQAVLSSAWQGDTGITYQGWQTQWNQALEDLVRAYQSMSGTHESNTMAMLARDGAEAAKWGG
1WA8 Chain:B ((606-688))
-----WNFAGIEAAASAIQGNVTSIHSLLDEGKQSLTKLAAAWGGSGSEAYQGVQQKWDATATELNNALQNLARTISEAGQAMASTEG--------
General information:
TITO was launched using:
RESULT:
Template:
1WA8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -3314 for 496 contacts (-6.7/contact) +
2D Compatibility (PS) -8501 + (NN) 1731 + (LL) 1124
1D Compatibility (HY) -2400 + (ID) 1100
Total energy: -12460.0 ( -25.12 by residue)
QMean score : 0.206
(partial model without unconserved sides chains):
PDB file :
Tito_1WA8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1WA8-query.scw
PDB file :
Tito_Scwrl_1WA8.pdb
: