Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKTFSHPHFFRSVLRWLQVGYPEGVPGPDRVALLSLLRSTPLTEEQIGEVVRHFTENGSPAVADRVIDRDEIAEFISEVTHHDAGPENIQRVAGILAAAGWPLAGVDVGESESGSDRAPASQG
2LKY Chain:A ((9-111))
---------FLAKIAAWLNAGYPEGVPGPDRVPLLALLTRRLTNDE-IKAIAEDLEKRAH-------FDHIDIGVLITQMTDEMPREEDIERVRRHLALQGWPLDDPRDGEEPDGESGGP----
General information:
TITO was launched using:
RESULT:
Template:
2LKY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -56733 for 674 contacts (-84.2/contact) +
2D Compatibility (PS) -11242 + (NN) -8144 + (LL) 1168
1D Compatibility (HY) -7200 + (ID) 1950
Total energy: -84101.0 ( -124.78 by residue)
QMean score : 0.603
(partial model without unconserved sides chains):
PDB file :
Tito_2LKY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LKY-query.scw
PDB file :
Tito_Scwrl_2LKY.pdb
: