Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MGTCPCESSERNEPVSRVSGTNEVSDGNETNNPAEVSDGNETNNPAEVSDGNETNNPAPVSRVSGTNEVSDGNETNNPAPVSRVSGTNEVSDGNETNNPAPVTEKPLHPHEPHIEILRGQPTDQELAALIAV--LGSISGSTPPAQPEPTRWGLPVDQLRYPVFSWQRITLQEMTHMRR |
3VVM Chain:A ((78-133)) | ----------------------------------------------------------------------------------------------------------------------GKPVDTDLWHVICVNSLGSCKGSTGPASTDP-RTGEPY-RLSFPELSIEDIA--------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3VVM.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 5314 for 221 contacts (24.0/contact) +
2D Compatibility (PS) -5237 + (NN) -6939 + (LL) 2440
1D Compatibility (HY) -3600 + (ID) 1100
Total energy: -9122.0 ( -41.28 by residue)
QMean score : 0.214
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