Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQVHVVDHPLAAARLTTLRDERTDNAGFRAALRELTLLLIYEATRDAPCEPVPIRTPLAETVGSRLTKPPL-LVPVLRAGLGMVDEAHAALPEAHVGFVGVARDEQTHQPVPYLDSLPDDLTDVPVMVLDPMVATGGSMTHTLGLLISRG--AADITVLCVVAAPEGIAALQKAAPNVRLFTAAIDEGLNEVAYIVPGLGDAGDRQFGPR
3DMP Chain:A ((9-213))
-NLFILDHPLIQHKLTHMRDKDTSTRTFRELLREITLLMGYEITRNLPITTKRVETPLVEIDAPVIAGKKLAIVPVLRAGVGMSDGLLELIPSARVGHIGVYRADD-HRPVEYLVRLPD-LEDRIFILCDPMVATGYSAAHAIDVLKRRGVPGERLMFLALVAAPEGVQVFQDAHPDVKLYVASLDSHLDDHAYIVPGLGDAGDRLFG--
General information:
TITO was launched using:
RESULT:
Template:
3DMP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -161894 for 1595 contacts (-101.5/contact) +
2D Compatibility (PS) -21422 + (NN) -8790 + (LL) 144
1D Compatibility (HY) -19600 + (ID) 4800
Total energy: -216362.0 ( -135.65 by residue)
QMean score : 0.534
(partial model without unconserved sides chains):
PDB file :
Tito_3DMP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3DMP-query.scw
PDB file :
Tito_Scwrl_3DMP.pdb
: