Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTVRAVLRRTVGAQWPILAGVNFWRRGALLIGIGVGVAAVLRLVLSEERAGLLVVRSKGIDFVTTVTVAAAMVYIASTIDPLGTG
2KKR Chain:A ((51-59))
-------------------------------------------------------RRKRFDVLL---------------------
General information:
TITO was launched using:
RESULT:
Template:
2KKR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 923 for 29 contacts (31.8/contact) +
2D Compatibility (PS) -918 + (NN) -195 + (LL) 7112
1D Compatibility (HY) -1200 + (ID) 150
Total energy: 5572.0 ( 192.14 by residue)
QMean score : -0.236
(partial model without unconserved sides chains):
PDB file :
Tito_2KKR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2KKR-query.scw
PDB file :
Tito_Scwrl_2KKR.pdb
: