Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQQWVDCEFTGRDFRDEDLSRLHTERAMFSECDFSGVNLAESQHRGSAFRNCTFERTTLWHSTFAQCSMLGSVFVACRLRPLTLDDVDFTLAVLGGNDLRGLNLTGCRLRETSLVDTDLRKCVLRGADLSGARTTGARLDDADLRGATVDPVLWRTASLVGARVDVDQAVAFAAAHGLCLAGG
4YFO Chain:A ((85-253))
------ANLSGANLEEANLEAANLRGADLHEANLSGADLQEANLTQANLKDANLSDANLEQADLAGADLQGAVLDGANLHGADLNGADLKQADLSGADLGGANLNNANLSEAMLTRANLEQ-----ADLSGARTTGARLDDADLRGATVDPVLWRTASLVGARVDVDQAVAFAAAHGLCL---
General information:
TITO was launched using:
RESULT:
Template:
4YFO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -145593 for 1546 contacts (-94.2/contact) +
2D Compatibility (PS) -17178 + (NN) 411 + (LL) 872
1D Compatibility (HY) -8000 + (ID) 4050
Total energy: -173538.0 ( -112.25 by residue)
QMean score : 0.365
(partial model without unconserved sides chains):
PDB file :
Tito_4YFO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4YFO-query.scw
PDB file :
Tito_Scwrl_4YFO.pdb
: