Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSICDPALRNALRTLKLSGMLDTLDARLAQTRNGDLGHLEFLQALREDEIARRESAALTRRLRRAKFEAQATFEDFDFTANPKLPGAMLRD----LAALRWLDAGESVILHGPVGVGKTHVAQALVHAVARRGGDVRFAKTSRMLSDLAGGHADRSWGQRIREYTKPLVLILDDFAMREHTAMHADDLY-ELISDRAITGKPLILTSNRAPNNWYGLF----PNPVVAESLLDRLINTSHQILMDGPSYRPRKRPGRTTS
4M4W Chain:J ((129-309))
----------------------------------------------------------------------ATFQQVDISDPSRL--AMFQHVTDFLKSYNETGKGKGLYLYGKFGVGKTFMLAAIANELAEKEYSSMIVYVPEFVRELKNS---QTLEEKLNMVKTTPVLMLDDIGAES---WVRDEVIGTVLQHRMSQQLPTFFSSNFSPDELKHHFTYSQ--EVKAARLMERILYLAAPIRLDGENRR----------
General information:
TITO was launched using:
RESULT:
Template:
4M4W.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -88018 for 1094 contacts (-80.5/contact) +
2D Compatibility (PS) -16223 + (NN) -1788 + (LL) 5760
1D Compatibility (HY) -12400 + (ID) 1950
Total energy: -114619.0 ( -104.77 by residue)
QMean score : 0.331
(partial model without unconserved sides chains):
PDB file :
Tito_4M4W.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4M4W-query.scw
PDB file :
Tito_Scwrl_4M4W.pdb
: